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Euryarchaeal RNase P sequences & structures

RNA secondary structures on this page are based on the model of Harris, et al., 2001 RNA 7:220.

Organism RNA Proteins Comments
Genus/species
Strain
Seq ID
Seq citation ID
Structure files
aPOP4
aRPR2
aPOP5
aRPP1

Type A RNAs
           
Halobacterium cutirubrum
.gb | .ct | .rnaml | .pdf         terminal primer sequences
Halobacterium sp. .gb | .ct | .rnaml | .pdf          
Halorubrum trapanicum
NRC 34021
.gb | .ct | .rnaml | .pdf         terminal primer sequences
Halococcus morrhuae
LD.3.1
.gb | .ct | .rnaml | .pdf          
Haloferax volcanii
DS-2
.gb | .ct | .rnaml | .pdf          
Methanobacterium formicicum
DSM 1312
.gb | .ct | .rnaml | .pdf          
Methanobacterium thermoautotrophicum
delta H
.gb | .ct | .rnaml | .pdf Mth11p Mth1618p Mth688p Mth687p terminal primer sequences
 
delta H
.gb | .ct | .rnaml | .pdf          
 
delta H
.gb | .ct | .rnaml | .pdf         terminal primers - not identical to the above
  .gb | .ct | .rnaml | .pdf         terminal primer sequences
  .gb | .ct | .rnaml | .pdf          
Methanosarcina barkeri
227
.gb | .ct | .rnaml | .pdf          
Methanothermus fervidus
V245
.gb | .ct | .rnaml | .pdf         partial
Natronobacterium gregoryi
SP2
.gb | .ct | .rnaml | .pdf          
Thermococcus celer
AL-1
.gb | .ct | .rnaml | .pdf         partial
 
AL-1
.gb | .ct | .rnaml | .pdf          
Thermococcus litoralis
.gb | .ct | .rnaml | .pdf         partial
Thermoplasma acidophilum
DSM 1728
.gb | .ct | .rnaml | .pdf          
Thermoplasma volcanum
.gb | .ct | .rnaml | .pdf          
Pyrococcus abyssi
GE5
- NA -
.gb | .ct | .rnaml | .pdf          
Pyrococcus furiosus
Vc1
- NA -
- NA -
.gb | .ct | .rnaml | .pdf          
 
Vc1
.gb | .ct | .rnaml | .pdf          
Pyrococcus horikoshii
OT3
.gb | .ct | .rnaml | .pdf Pho1771p Pho1601p Pho1481p Pho1877p  
Wastewater SL2D
.gb | .ct | .rnaml | .pdf         environmental/partial
Wastewater SL-C
.gb | .ct | .rnaml | .pdf         environmental/partial
Enrichment 1B
.gb | .ct | .rnaml | .pdf         environmental/partial
Enrichment E
.gb | .ct | .rnaml | .pdf         environmental/partial
Enrichment H
.gb | .ct | .rnaml | .pdf         environmental/partial
Sludge 1-1
.gb | .ct | .rnaml | .pdf         environmental/partial

Type M RNAs
           
Archaeoglobus fulgidus
DSM 4304
.gb | .ct | .rnaml | .pdf          
Methanococcus jannaschii
JAL-1
.gb | .ct | .rnaml | .pdf Mja464p Mja962p Mja494p Mja1139p  
Methanococcus marapaludis
JJ
.gb | .ct | .rnaml | .pdf         terminal primer sequences
Methanococcus thermolithotrophicus
SN-1
.gb | .ct | .rnaml | .pdf         terminal primer sequences
Methanococcus vannielii
EY-33
.gb | .ct | .rnaml | .pdf         terminal primer sequences

Last updated
James W. Brown
Department of Microbiology, NC State University
Raleigh, NC 27695 USA
james_brown@ncsu.edu
www.mbio.ncsu.edu/JWB