Highly diverse community structure in a remote central Tibetan geothermal spring does not display monotonic variation to thermal stress.


Recordings


Textbook readings

Chapter 21, pages 331 - 333


Notes, Comments and Updates

pdfYim LC, Hongmei J, Aitchison JC & Pointing SB 2006 Highly diverse community structure in a remote central Tibetan geothermal spring does not display monotonic variation to thermal stress. FEMS Microbiol Ecol. 57:80-91

Here are BLAST results, given in the online data supplement:

GenBank Accession Number
Sequence code*
Closest BLAST match
Identity Location# GenBank Accession number %
Similarity
DQ001343 TS4-a5-70 Pyrobaculum aerophilum IM2 Boiling marine water, Italy AE009843 93
DQ001344 TM3-a5-63 Thermoproteus sp. IC-061 Hot spring, Japan AB081846 73
DQ001345 TM3-a6-63 Uncultured archaeon GA55 Japan AB046184 94
DQ001346 TS1-a4-65 Uncultured archaeon SAGMA-2 Deep South African gold mines AB050233 84
DQ001347 TS4-a2-70 Uncultured crenarchaeote GoM_5202R-15 Marine sediment, Mexico AY324539 80
DQ001348 TS1-a1-65 Uncultured archaeon pCIRA-X Hydrothermal field, Japan AB095133 77
DQ001349 TM3-a2-63 Uncultured archaeon pCIRA-X Hydrothermal field, Japan AB095133 75
DQ001350 TS5-a5-83 Unidentified archaeon pMC2A17 Deep sea hydrothermal vent, Japan AB019747 79
DQ001351 TM3-a1-63 Uncultured euryarchaeote VAL31-1 Feshwater lake water, Valkekotinen Lake, Finland AJ131276 81
DQ001352 TM5-a3-69 Archaeoglobus profundus DSM5631 Deep sea hydrothermal vent, Mexico AF322392 91
DQ001353 TM4-a4-65 Uncultured archaeon AK49 Hot spring, Thailand AY555828 93
DQ001354 TM3-b4-63 Uncultured Aeromonas sp. Lake Waiau, Hawaii AY345531 98
DQ001355 TM5-b11-69 Uncultured Aeromonas sp. Lake Waiau, Hawaii AY345531 94
DQ001356 TM5-b1-69 Uncultured Aeromonas sp. Lake Waiau, Hawaii AY345531 99
DQ001357 TM5-b12-69 Uncultured Aeromonas sp. Lake Waiau, Hawaii AY345531 99
DQ001358 TS4-b11-70 Corbulabacter subterraneus Thermal aquifer, Australia AY078053 92
DQ001359 TS2-b18-70 Sphingomonas sp. M3C203B-B Ice core, Taylor Dome, Antarctica AF395031 99
DQ001360 TS4-b8-70 Acidobacteriaceae sp. Peaty grassland soil Y12597 79
DQ001361 TM1-g1-52 Uncultured Acidobacteria sp. GFP1 GFP hot spring (67oC), YNP, USA AF130858 95
DQ001362 TS1-b1-65 Cytophaga sp. Deep-see sediment, Japan AB015265 85
DQ001363 TS3-b3-70 Flexibacter rubber Hot spring, Japan AB078065 96
DQ001364 TS2-b4-70 Arcocella aquatica Freshwater lake, Moscow, Russia AJ535729 78
DQ001365 TS2-b13-70 Methylothermus sp. Underground hot springs, Hungary U89299 79
DQ001366 TS1-b2-65 Unidentified sp. Obsidian Pool, YNP, USA AF018187 86
DQ001367 TM4-b10-65 Desulfotomaculum sp. Underground oil-storage cavity, Japan AB074934 79
DQ001368 TS3-b5-70 Cytophage sp. Deep-see sediment, Japan AB015265 78
DQ001369 TM3-b3-63 Unidentified Cytophales/GSB sp. OPB56 Obsidan Pool, YNP, USA AF027009 86
DQ001370 TM4-b16-65 Unidentified GSB sp. OPS77 Obsidian Pool, YNP, USA AF027011 97
DQ001371 TM3-b8-63 Chlorobium tepidium TLS High-sulfide hot spring, New Zealand AE012963 86
DQ001372 TS2-b6-70 Prosthecochloris aestuarri Hypersaline Chiprana Lake, Spain AJ291826 86
DQ001373 TM5-b15-69 Thermosipho japonicus Deep-sea hydrothermal vent, Okinawa, Japan AB024932 90
DQ001374 TM4-b9-65 Eubacterium sp. OS type L Octopus Spring, YNP, USA L04707 95
DQ001375 TS2-b14-70 Eubacterium sp. OS type L Octopus Spring, YNP, USA L04707 95
DQ001376 TS5-g5-83 Uncultured Eubacterium sp. clone SM2G08 Mammoth Springs, YNP, USA AF445740 95
DQ001377 TM4-b14-65 Eubacterium sp. OS type L Oregon Spring, YNP, USA L04707 95
DQ001378 TM4-b13-65 Candidate Division OP9 clone OPB72 Obsidan Pool, YNP, USA AF027086 98
DQ001379 TM5-g4-69 Unidentified Thermodesulfobacterium sp. OPB45 Hot spring, YNP, USA AF027096 92
DQ001380 TS2-b15-70 Thermus scotoductus Hot spring, Iceland Y18410 98
DQ001381 TS5-b17-83 Thermus scotoductus Hot spring, Iceland Y18410 98
DQ001382 TS5-b16-83 Thermus scotoductus Hot spring, Iceland Y18410 98
DQ001383 TM5-b5-69 Roseiflexus castenholzii Hot spring, Japan AB041226 96
DQ001384 TM1-b6-52 Roseiflexus castenholzii Hot spring, Japan AB041226 81
DQ001385 TM4-b17-65 Roseiflexus castenholzii Hot spring, Japan AB041226 96
DQ001386 TM3-b18-63 Chloroflexus aggregans Hot spring, Japan AJ308499 94
DQ001387 TS1-b10-65 Uncultured GNS sp. CASM vent field, Axial Volcano, Juan de Fuca Ridge AJ441227 82
DQ001388 TM2-c10-62 Uncultured cyanobacterium Mammoth hot springs, YNP, USA AF445722 95
DQ001388 TS3-c3-70 Synechococcus sp. clone OH 32 Hot spring, Oregon, USA AF285243 95
DQ001389 TS3-c4-70 Synechococcus sp. clone OH 32 Hot spring, Oregon, USA AF285243 95
DQ001390 TS2-c1-65 Synechococcus sp. clone OH 32 Hot spring, Oregon, USA AF285243 95
DQ001391 TM1-c9-52 Synechococcus sp. C9 Octopus Spring, YNP, USA AF132773 99
DQ001392 TM3-c11-63 Synechococcus sp. C9 Octopus Spring, YNP, USA AF132773 96
DQ001393 TM5-c1-69 Synechococcus sp. clone OH 32 Hot spring, Oregon, USA AF285243 89
DQ001394 TS3-b7-70 Leptolyngbya sp. Semi-arid deserts, western USA AY239602 88
DQ001395 TM2-b7-62 Leptolyngbya sp. Semi-arid deserts, western USA AY239602 89
DQ001396 TM2-c3-62 Thermosynechococcus elongatus Hot spring, Japan AP005376 95
DQ001397 TM3-c4-63 Thermosynechococcus elongatus Hot spring, Japan AP005376 95
DQ001398 TM3-c2-63 Thermosynechococcus elongatus Hot spring, Japan AP005376 98
DQ001400 TM2-c5-62 Thermosynechococcus elongatus Hot spring, Japan AP005376 95

* TM prefix denotes sequences derived from mats, whilst TS prefix denotes those derived from streamers. Centre letter/number is an identifier. Numeric suffixes denote temperature from which sequence was recovered.
# YNP denotes Yellowstone National Park.